Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 AC091804.1-201ENST00000486888 567 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 HIST2H2BC-201ENST00000498492 580 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 ACTG1P17-201ENST00000558391 1119 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 AC007663.3-201ENST00000609632 465 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 AL136301.1-201ENST00000615830 422 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 AC022748.3-201ENST00000621828 275 ntBASIC17.06■□□□□ 0.32
COL20A1Q9P218 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 FNTAP2-201ENST00000430308 634 ntBASIC17.05■□□□□ 0.32
COL20A1Q9P218 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 BX284668.4-201ENST00000453917 508 ntBASIC17.05■□□□□ 0.32
COL20A1Q9P218 AKR7A2P1-201ENST00000460134 915 ntBASIC17.05■□□□□ 0.32
COL20A1Q9P218 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 AC009955.4-201ENST00000597192 544 ntBASIC17.05■□□□□ 0.32
COL20A1Q9P218 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL20A1Q9P218 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
COL20A1Q9P218 E2F3P2-201ENST00000447755 1422 ntBASIC17.04■□□□□ 0.32
COL20A1Q9P218 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 CALR4P-201ENST00000431943 946 ntBASIC17.04■□□□□ 0.32
COL20A1Q9P218 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.04■□□□□ 0.32
COL20A1Q9P218 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL20A1Q9P218 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms