Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC236430.1-201ENST00000402231 743 ntBASIC16.29■□□□□ 0.2
SIX2Q9NPC8 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC002472.2-201ENST00000442739 958 ntBASIC16.29■□□□□ 0.2
SIX2Q9NPC8 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SIX2Q9NPC8 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC008494.3-201ENST00000606615 944 ntBASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC004233.3-201ENST00000607794 1269 ntBASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SIX2Q9NPC8 AC015802.1-201ENST00000588104 1449 ntBASIC16.28■□□□□ 0.2
SIX2Q9NPC8 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms