Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 AC092580.3-201ENST00000430932 139 ntBASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 AC125807.1-201ENST00000483097 614 ntBASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM56Q9BRZ2 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC015656.1-201ENST00000624209 3578 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 REXO1L4P-201ENST00000605109 1937 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 RPL5P21-201ENST00000404620 815 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC015922.1-201ENST00000421102 1152 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 SERBP1P3-201ENST00000459980 809 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC044860.1-202ENST00000559481 777 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 MIR3197-201ENST00000582241 73 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC025181.2-201ENST00000606994 802 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AC140479.7-201ENST00000636301 2332 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 AL121723.1-201ENST00000445194 1519 ntBASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM56Q9BRZ2 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 MTHFR-210ENST00000641407 2387 ntBASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms