Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 Z97205.2-201ENST00000564697 1639 ntBASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 CICP8-201ENST00000455800 2813 ntBASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 KRT18P13-201ENST00000400056 1290 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AC025048.3-201ENST00000590609 569 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AC005702.4-201ENST00000618393 416 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AF228730.6-201ENST00000641497 218 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AC084121.3-201ENST00000641716 218 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLIP4Q8N3C7 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 RPL5P21-201ENST00000404620 815 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TSEN15P1-201ENST00000423257 515 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SERBP1P3-201ENST00000459980 809 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 AL138828.2-201ENST00000615812 383 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SPDYE12P-201ENST00000618416 771 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms