Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 AC004233.3-201ENST00000607794 1269 ntBASIC18.24■□□□□ 0.51
RNF20Q5VTR2 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF20Q5VTR2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AL158070.2-201ENST00000623713 1621 ntBASIC18.23■□□□□ 0.51
RNF20Q5VTR2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AC120045.2-201ENST00000567334 178 ntBASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AC007431.3-201ENST00000623221 587 ntBASIC18.23■□□□□ 0.51
RNF20Q5VTR2 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF20Q5VTR2 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AC106881.1-201ENST00000605849 3329 ntBASIC18.22■□□□□ 0.51
RNF20Q5VTR2 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 BX539320.1-201ENST00000623759 877 ntBASIC18.22■□□□□ 0.51
RNF20Q5VTR2 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF20Q5VTR2 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 AC007541.1-201ENST00000570282 1469 ntBASIC18.21■□□□□ 0.51
RNF20Q5VTR2 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF20Q5VTR2 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms