Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SCN1BQ07699 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 AC131212.3-201ENST00000624087 4219 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SCN1BQ07699 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.69□□□□□ -0.22
SCN1BQ07699 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.69□□□□□ -0.22
SCN1BQ07699 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.69□□□□□ -0.22
SCN1BQ07699 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.69□□□□□ -0.22
SCN1BQ07699 BX640515.1-201ENST00000617215 977 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 MTHFR-210ENST00000641407 2387 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
SCN1BQ07699 AL589702.1-201ENST00000641229 1509 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
SCN1BQ07699 ACE3P-201ENST00000423435 1973 ntBASIC13.69□□□□□ -0.22
SCN1BQ07699 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SCN1BQ07699 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 AC023274.1-201ENST00000418278 595 ntBASIC13.68□□□□□ -0.22
SCN1BQ07699 AL591424.1-201ENST00000442569 1213 ntBASIC13.68□□□□□ -0.22
SCN1BQ07699 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 AC106730.1-201ENST00000566722 1090 ntBASIC13.68□□□□□ -0.22
SCN1BQ07699 AP002472.1-201ENST00000577490 586 ntBASIC13.68□□□□□ -0.22
SCN1BQ07699 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 AC134407.2-201ENST00000625089 1978 ntBASIC13.68□□□□□ -0.22
SCN1BQ07699 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.68□□□□□ -0.22
SCN1BQ07699 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SCN1BQ07699 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SCN1BQ07699 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
SCN1BQ07699 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SCN1BQ07699 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.67□□□□□ -0.22
SCN1BQ07699 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SCN1BQ07699 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SCN1BQ07699 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms