Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 AC069224.1-201ENST00000566372 1715 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 AC022211.2-201ENST00000585075 2527 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 HLA-DMA-202ENST00000395303 1007 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 SIGLEC20P-201ENST00000595243 1311 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 FKBP4P8-201ENST00000610931 1369 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 ILF3-AS1-201ENST00000591501 1983 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 HNRNPA1P25-201ENST00000422644 937 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 CDCA4P4-201ENST00000435216 680 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.96
HSPG2P98160 AP002353.1-201ENST00000528257 1599 ntBASIC9.09□□□□□ -0.96
HSPG2P98160 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.96
HSPG2P98160 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.96
HSPG2P98160 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 FAU-201ENST00000279259 461 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
HSPG2P98160 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 KNOP1P1-201ENST00000542108 989 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 KRT8P2-201ENST00000556193 944 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 APOC1-209ENST00000592885 562 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 AGGF1P2-201ENST00000426656 2106 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 CFL1P6-201ENST00000400899 494 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 MDH2-205ENST00000461263 648 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 RN7SL23P-201ENST00000484055 275 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 RN7SL665P-201ENST00000578793 300 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC9.08□□□□□ -0.96
HSPG2P98160 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
HSPG2P98160 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC9.08□□□□□ -0.96
HSPG2P98160 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC9.08□□□□□ -0.96
HSPG2P98160 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC9.08□□□□□ -0.96
HSPG2P98160 AL450487.2-201ENST00000615934 407 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 AC010531.8-201ENST00000623341 685 ntBASIC9.08□□□□□ -0.96
HSPG2P98160 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms