Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
MSH6P52701 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH6P52701 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH6P52701 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH6P52701 AL138725.1-201ENST00000407347 1314 ntBASIC20.7■□□□□ 0.9
MSH6P52701 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC20.7■□□□□ 0.9
MSH6P52701 AL360270.3-201ENST00000609118 1348 ntBASIC20.7■□□□□ 0.9
MSH6P52701 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MSH6P52701 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH6P52701 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC20.7■□□□□ 0.9
MSH6P52701 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH6P52701 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC20.7■□□□□ 0.9
MSH6P52701 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC20.7■□□□□ 0.9
MSH6P52701 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
MSH6P52701 CYP4F23P-201ENST00000593402 1579 ntBASIC20.7■□□□□ 0.9
MSH6P52701 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC20.7■□□□□ 0.9
MSH6P52701 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.69■□□□□ 0.9
MSH6P52701 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
MSH6P52701 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
MSH6P52701 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.69■□□□□ 0.9
MSH6P52701 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
MSH6P52701 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 MST1L-201ENST00000442552 2185 ntBASIC20.69■□□□□ 0.9
MSH6P52701 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC20.69■□□□□ 0.9
MSH6P52701 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC20.69■□□□□ 0.9
MSH6P52701 AL645933.1-201ENST00000440087 609 ntBASIC20.69■□□□□ 0.9
MSH6P52701 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC20.69■□□□□ 0.9
MSH6P52701 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
MSH6P52701 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH6P52701 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
MSH6P52701 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
MSH6P52701 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
MSH6P52701 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
MSH6P52701 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC20.68■□□□□ 0.9
MSH6P52701 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
MSH6P52701 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
MSH6P52701 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC20.68■□□□□ 0.9
MSH6P52701 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC20.68■□□□□ 0.9
MSH6P52701 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
MSH6P52701 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 LINC01815-202ENST00000641468 1409 ntBASIC20.68■□□□□ 0.9
MSH6P52701 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH6P52701 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSH6P52701 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH6P52701 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 USP4-203ENST00000415188 1454 ntTSL 3 BASIC20.67■□□□□ 0.9
MSH6P52701 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 AC069224.1-201ENST00000566372 1715 ntBASIC20.67■□□□□ 0.9
MSH6P52701 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH6P52701 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSH6P52701 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
MSH6P52701 RNA5SP359-201ENST00000364838 113 ntBASIC20.67■□□□□ 0.9
MSH6P52701 COX20P1-201ENST00000366529 357 ntBASIC20.67■□□□□ 0.9
MSH6P52701 RPL5P21-201ENST00000404620 815 ntBASIC20.67■□□□□ 0.9
MSH6P52701 STK16-203ENST00000409516 895 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH6P52701 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.67■□□□□ 0.9
MSH6P52701 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 AC114947.1-202ENST00000514136 344 ntBASIC20.67■□□□□ 0.9
MSH6P52701 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC20.67■□□□□ 0.9
MSH6P52701 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH6P52701 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC20.67■□□□□ 0.9
MSH6P52701 MT3-203ENST00000565838 421 ntTSL 3 BASIC20.67■□□□□ 0.9
MSH6P52701 PLS3-210ENST00000626746 216 ntTSL 4 BASIC20.67■□□□□ 0.9
MSH6P52701 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH6P52701 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH6P52701 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms