Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 Z82170.1-201ENST00000625081 3192 ntBASIC16.16■□□□□ 0.18
LIG3P49916 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIG3P49916 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.16■□□□□ 0.18
LIG3P49916 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 AC148477.4-201ENST00000613430 1793 ntBASIC16.15■□□□□ 0.18
LIG3P49916 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.15■□□□□ 0.18
LIG3P49916 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.15■□□□□ 0.18
LIG3P49916 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
LIG3P49916 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 AC112693.3-201ENST00000624819 1983 ntBASIC16.15■□□□□ 0.18
LIG3P49916 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
LIG3P49916 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
LIG3P49916 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
LIG3P49916 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.15■□□□□ 0.18
LIG3P49916 AL080243.2-201ENST00000418783 582 ntBASIC16.15■□□□□ 0.18
LIG3P49916 TSSK5P-201ENST00000423978 907 ntBASIC16.15■□□□□ 0.18
LIG3P49916 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.15■□□□□ 0.18
LIG3P49916 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.15■□□□□ 0.18
LIG3P49916 UGT1A2P-201ENST00000454886 866 ntBASIC16.15■□□□□ 0.18
LIG3P49916 AC004890.2-204ENST00000481968 304 ntBASIC16.15■□□□□ 0.18
LIG3P49916 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.15■□□□□ 0.18
LIG3P49916 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.15■□□□□ 0.18
LIG3P49916 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.15■□□□□ 0.18
LIG3P49916 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.15■□□□□ 0.18
LIG3P49916 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC16.15■□□□□ 0.18
LIG3P49916 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LIG3P49916 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIG3P49916 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
LIG3P49916 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
LIG3P49916 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.14■□□□□ 0.17
LIG3P49916 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
LIG3P49916 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.14■□□□□ 0.17
LIG3P49916 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 MROH4P-201ENST00000431302 1578 ntBASIC16.14■□□□□ 0.17
LIG3P49916 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 MBLAC2-202ENST00000514906 1936 ntBASIC16.14■□□□□ 0.17
LIG3P49916 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
LIG3P49916 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
LIG3P49916 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.14■□□□□ 0.17
LIG3P49916 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.14■□□□□ 0.17
LIG3P49916 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 MIR3197-201ENST00000582241 73 ntBASIC16.14■□□□□ 0.17
LIG3P49916 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 C18orf15-201ENST00000623680 2534 ntBASIC16.14■□□□□ 0.17
LIG3P49916 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 AC027612.1-201ENST00000445234 2395 ntBASIC16.14■□□□□ 0.17
LIG3P49916 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.14■□□□□ 0.17
LIG3P49916 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
LIG3P49916 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.14■□□□□ 0.17
LIG3P49916 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIG3P49916 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
LIG3P49916 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms