Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.42□□□□□ -0.1
RFX3P48380 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 SPDYE19P-201ENST00000338590 713 ntBASIC14.42□□□□□ -0.1
RFX3P48380 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.42□□□□□ -0.1
RFX3P48380 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.42□□□□□ -0.1
RFX3P48380 MRPS18AP1-201ENST00000414458 589 ntBASIC14.42□□□□□ -0.1
RFX3P48380 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 GNAQP1-201ENST00000444815 1067 ntBASIC14.42□□□□□ -0.1
RFX3P48380 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 KRT18P43-201ENST00000469825 1281 ntBASIC14.42□□□□□ -0.1
RFX3P48380 ZNF890P-202ENST00000530367 1156 ntBASIC14.42□□□□□ -0.1
RFX3P48380 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.42□□□□□ -0.1
RFX3P48380 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.42□□□□□ -0.1
RFX3P48380 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 AC015910.1-201ENST00000579400 975 ntBASIC14.42□□□□□ -0.1
RFX3P48380 SRD5A3P1-201ENST00000603021 949 ntBASIC14.42□□□□□ -0.1
RFX3P48380 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.42□□□□□ -0.1
RFX3P48380 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.42□□□□□ -0.1
RFX3P48380 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.42□□□□□ -0.1
RFX3P48380 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.42□□□□□ -0.1
RFX3P48380 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.42□□□□□ -0.1
RFX3P48380 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RFX3P48380 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
RFX3P48380 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
RFX3P48380 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.41□□□□□ -0.1
RFX3P48380 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.41□□□□□ -0.1
RFX3P48380 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.41□□□□□ -0.1
RFX3P48380 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.41□□□□□ -0.1
RFX3P48380 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 DOC2GP-202ENST00000514950 1163 ntBASIC14.41□□□□□ -0.1
RFX3P48380 TPRX2P-201ENST00000535362 881 ntBASIC14.41□□□□□ -0.1
RFX3P48380 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
RFX3P48380 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.41□□□□□ -0.1
RFX3P48380 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
RFX3P48380 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms