Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 AL928921.2-201ENST00000641325 2442 ntBASIC12.57□□□□□ -0.4
CDX1P47902 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CDX1P47902 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 AC100757.3-201ENST00000622361 1406 ntBASIC12.57□□□□□ -0.4
CDX1P47902 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.57□□□□□ -0.4
CDX1P47902 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.57□□□□□ -0.4
CDX1P47902 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 AL139010.1-201ENST00000454878 894 ntBASIC12.57□□□□□ -0.4
CDX1P47902 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.57□□□□□ -0.4
CDX1P47902 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.57□□□□□ -0.4
CDX1P47902 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.57□□□□□ -0.4
CDX1P47902 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.56□□□□□ -0.4
CDX1P47902 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC12.56□□□□□ -0.4
CDX1P47902 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.56□□□□□ -0.4
CDX1P47902 BANF1P1-201ENST00000553684 263 ntBASIC12.56□□□□□ -0.4
CDX1P47902 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.56□□□□□ -0.4
CDX1P47902 MIR4745-201ENST00000577608 62 ntBASIC12.56□□□□□ -0.4
CDX1P47902 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.56□□□□□ -0.4
CDX1P47902 AL133215.2-201ENST00000609242 977 ntBASIC12.56□□□□□ -0.4
CDX1P47902 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.56□□□□□ -0.4
CDX1P47902 SPDYE12P-201ENST00000618416 771 ntBASIC12.56□□□□□ -0.4
CDX1P47902 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 AC087481.3-201ENST00000602886 1894 ntBASIC12.56□□□□□ -0.4
CDX1P47902 FGD5P1-202ENST00000614866 2498 ntBASIC12.56□□□□□ -0.4
CDX1P47902 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms