Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 RPL18P13-201ENST00000478088 569 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.42■□□□□ 0.22
CHRNA1P02708 MARK2P5-201ENST00000507649 634 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 FGFR3P5-201ENST00000564496 886 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CHRNA1P02708 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.42■□□□□ 0.22
CHRNA1P02708 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.42■□□□□ 0.22
CHRNA1P02708 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 AC090164.2-201ENST00000611487 516 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 AL805961.1-203ENST00000641078 1258 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CHRNA1P02708 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CHRNA1P02708 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CHRNA1P02708 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.42■□□□□ 0.22
CHRNA1P02708 AC020658.6-201ENST00000623564 1870 ntBASIC16.42■□□□□ 0.22
CHRNA1P02708 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHRNA1P02708 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.41■□□□□ 0.22
CHRNA1P02708 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.41■□□□□ 0.22
CHRNA1P02708 KLF2P1-201ENST00000447438 1042 ntBASIC16.41■□□□□ 0.22
CHRNA1P02708 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 AC134698.3-201ENST00000523880 214 ntBASIC16.41■□□□□ 0.22
CHRNA1P02708 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.41■□□□□ 0.22
CHRNA1P02708 AP000845.1-201ENST00000581677 2131 ntBASIC16.41■□□□□ 0.22
CHRNA1P02708 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.41■□□□□ 0.22
CHRNA1P02708 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.41■□□□□ 0.22
CHRNA1P02708 AF254983.2-201ENST00000612331 135 ntBASIC16.41■□□□□ 0.22
CHRNA1P02708 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
CHRNA1P02708 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.41■□□□□ 0.22
CHRNA1P02708 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.41■□□□□ 0.22
CHRNA1P02708 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.41■□□□□ 0.22
CHRNA1P02708 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CHRNA1P02708 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CHRNA1P02708 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.4■□□□□ 0.22
CHRNA1P02708 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CHRNA1P02708 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 HINT2P1-201ENST00000419438 481 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.4■□□□□ 0.22
CHRNA1P02708 PUDPP3-201ENST00000445368 636 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 AC012618.1-201ENST00000461223 412 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 NUP210P1-202ENST00000504322 710 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 AL160314.3-201ENST00000556041 767 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.4■□□□□ 0.22
CHRNA1P02708 SNORD3B-2-202ENST00000571722 791 ntBASIC16.4■□□□□ 0.22
CHRNA1P02708 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.4■□□□□ 0.22
CHRNA1P02708 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CHRNA1P02708 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA1P02708 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHRNA1P02708 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms