Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 REXO1L4P-201ENST00000605109 1937 ntBASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AC023824.1-201ENST00000562945 2975 ntBASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC013470.3-201ENST00000420252 1194 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 FAM86LP-201ENST00000478302 853 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AL390955.2-201ENST00000603032 514 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AC005014.3-201ENST00000605985 190 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS9D1Q9Y2B5 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AP000845.1-201ENST00000581677 2131 ntBASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AL645937.2-201ENST00000396808 931 ntBASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AC093004.1-201ENST00000508850 424 ntBASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 AC009118.2-201ENST00000613275 655 ntBASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms