Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 REXO1L4P-201ENST00000605109 1937 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AC114501.2-201ENST00000439631 535 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 KRT18P43-201ENST00000469825 1281 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AL096865.1-201ENST00000606796 927 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AC025181.2-201ENST00000606994 802 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 GRK6P1-201ENST00000400595 1711 ntBASIC12.39□□□□□ -0.43
FOXA2Q9Y261 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
FOXA2Q9Y261 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RPL13P2-201ENST00000440687 659 ntBASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AC009407.1-201ENST00000568958 598 ntBASIC12.38□□□□□ -0.43
FOXA2Q9Y261 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AC008738.7-201ENST00000609744 511 ntBASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 AC009118.2-201ENST00000613275 655 ntBASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms