Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCSER1Q9C0I3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCSER1Q9C0I3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCSER1Q9C0I3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 DGCR5-201ENST00000399539 862 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 ACTBP8-201ENST00000403258 1108 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 EIF3FP3-201ENST00000434851 1086 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CU634019.7-201ENST00000624153 1185 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 FP236241.2-201ENST00000624906 1185 ntBASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.03■□□□□ 0.32
CCSER1Q9C0I3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AL513477.1-201ENST00000602865 2407 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 MTHFR-210ENST00000641407 2387 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AC093433.1-201ENST00000458048 571 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 GIMAP3P-201ENST00000495150 836 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AC022137.2-201ENST00000503482 481 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CCSER1Q9C0I3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 AC140479.7-201ENST00000636301 2332 ntBASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 AC018665.1-201ENST00000622927 1362 ntBASIC17.02■□□□□ 0.31
CCSER1Q9C0I3 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCSER1Q9C0I3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCSER1Q9C0I3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.01■□□□□ 0.31
CCSER1Q9C0I3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCSER1Q9C0I3 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms