Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.45■□□□□ 0.38
USP28Q96RU2 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.45■□□□□ 0.38
USP28Q96RU2 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.45■□□□□ 0.38
USP28Q96RU2 AC107373.2-201ENST00000607735 490 ntBASIC17.45■□□□□ 0.38
USP28Q96RU2 AL662799.1-202ENST00000614205 422 ntBASIC17.45■□□□□ 0.38
USP28Q96RU2 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
USP28Q96RU2 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.45■□□□□ 0.38
USP28Q96RU2 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 AL137783.1-201ENST00000623494 1896 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 AL158070.2-201ENST00000623713 1621 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.44■□□□□ 0.38
USP28Q96RU2 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.44■□□□□ 0.38
USP28Q96RU2 AL353779.1-201ENST00000434793 351 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 FAM86LP-201ENST00000478302 853 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.44■□□□□ 0.38
USP28Q96RU2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.44■□□□□ 0.38
USP28Q96RU2 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.44■□□□□ 0.38
USP28Q96RU2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.44■□□□□ 0.38
USP28Q96RU2 RARRES2P5-201ENST00000564013 466 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.44■□□□□ 0.38
USP28Q96RU2 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.44■□□□□ 0.38
USP28Q96RU2 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.44■□□□□ 0.38
USP28Q96RU2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 AC023090.2-201ENST00000625182 2110 ntBASIC17.44■□□□□ 0.38
USP28Q96RU2 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP28Q96RU2 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
USP28Q96RU2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.43■□□□□ 0.38
USP28Q96RU2 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 AC026410.3-201ENST00000514280 936 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.43■□□□□ 0.38
USP28Q96RU2 AC023310.3-201ENST00000557027 670 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 AC100756.1-201ENST00000562736 682 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 AC138749.3-201ENST00000567691 622 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 AC116165.1-201ENST00000611806 668 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 AC093512.1-201ENST00000617969 520 ntBASIC17.43■□□□□ 0.38
USP28Q96RU2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.43■□□□□ 0.38
USP28Q96RU2 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms