Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HNRNPA1P48-201ENST00000562726 1377 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC092850.2-201ENST00000623821 2697 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GZMB-202ENST00000382540 816 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 REEP1-202ENST00000453231 940 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RPS3-201ENST00000278572 907 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 STX1A-203ENST00000395155 783 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PFAS-212ENST00000625942 396 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARHGAP30-201ENST00000368013 4394 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NME6-203ENST00000415644 849 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RPL13P2-201ENST00000440687 659 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC103810.3-201ENST00000583567 96 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NAT9-224ENST00000583757 583 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC138627.1-207ENST00000641560 1006 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL445209.1-201ENST00000607269 3491 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ELK2AP-201ENST00000392510 1007 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TTC39B-202ENST00000380850 3221 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms