Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CICP11-201ENST00000434745 2827 ntBASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 KRT18P64-201ENST00000434946 1219 ntBASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 AL033527.5-202ENST00000641632 1098 ntBASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLIP4Q8N3C7 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 Z92544.3-201ENST00000624747 417 ntBASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 AL390755.1-201ENST00000623716 2027 ntBASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLIP4Q8N3C7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms