Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AC093752.3-201ENST00000567343 901 ntBASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 BX088702.1-201ENST00000610784 235 ntBASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AC025262.2-201ENST00000623975 1056 ntBASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 PKD1P1-201ENST00000458669 6805 ntBASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT28Q7Z3Y7 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 AC012508.2-201ENST00000567613 1472 ntBASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 NKILA-202ENST00000614771 2598 ntBASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 KRT18P9-201ENST00000604826 1300 ntBASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
KRT28Q7Z3Y7 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 AL807761.2-201ENST00000422849 729 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 RPSAP15-201ENST00000448168 861 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 DUTP3-201ENST00000450025 415 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 PPOX-204ENST00000462866 473 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 TMCO5B-205ENST00000530020 894 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 MIR3188-201ENST00000583494 85 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 AC084781.1-201ENST00000613737 656 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 AC133540.1-201ENST00000620845 1019 ntBASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT28Q7Z3Y7 AC010491.1-201ENST00000563101 2797 ntBASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms