Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC88AQ3V6T2 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC88AQ3V6T2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC88AQ3V6T2 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC88AQ3V6T2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC88AQ3V6T2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC88AQ3V6T2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 FTH1P22-201ENST00000456305 520 ntBASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 AC018463.1-201ENST00000456674 917 ntBASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 IL9RP3-201ENST00000442856 1674 ntBASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC88AQ3V6T2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 CHCHD2P9-201ENST00000461726 456 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 POU5F1P2-201ENST00000521750 823 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 MIR6858-201ENST00000620733 67 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 AL359258.3-201ENST00000622910 2331 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 AC006058.4-201ENST00000624016 1670 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 PRAL-201ENST00000624952 3286 ntBASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC88AQ3V6T2 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC004837.1-201ENST00000446267 564 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC007950.2-201ENST00000615045 2347 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 LINC01165-201ENST00000445190 1623 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms