Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CYP4F24P-201ENST00000586049 1580 ntBASIC14.74□□□□□ -0.05
COL28A1Q2UY09 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 COX5BP1-201ENST00000507622 393 ntBASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AC025279.2-201ENST00000569730 653 ntBASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.74□□□□□ -0.05
COL28A1Q2UY09 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 RPL13P2-201ENST00000440687 659 ntBASIC14.73□□□□□ -0.05
COL28A1Q2UY09 SPTLC1P5-201ENST00000450718 252 ntBASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms