Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC10.62□□□□□ -0.71
PRKDCP78527 THAP4-203ENST00000402545 833 ntTSL 5 BASIC10.62□□□□□ -0.71
PRKDCP78527 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC10.62□□□□□ -0.71
PRKDCP78527 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC10.62□□□□□ -0.71
PRKDCP78527 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC10.62□□□□□ -0.71
PRKDCP78527 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC10.62□□□□□ -0.71
PRKDCP78527 RN7SL121P-201ENST00000584223 273 ntBASIC10.62□□□□□ -0.71
PRKDCP78527 AC005274.1-201ENST00000623460 802 ntBASIC10.62□□□□□ -0.71
PRKDCP78527 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC10.62□□□□□ -0.71
PRKDCP78527 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC10.62□□□□□ -0.71
PRKDCP78527 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC10.62□□□□□ -0.71
PRKDCP78527 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
PRKDCP78527 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 POLR2LP1-206ENST00000444785 187 ntBASIC10.61□□□□□ -0.71
PRKDCP78527 RNA5SP406-201ENST00000516106 112 ntBASIC10.61□□□□□ -0.71
PRKDCP78527 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
PRKDCP78527 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC10.61□□□□□ -0.71
PRKDCP78527 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC10.61□□□□□ -0.71
PRKDCP78527 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
PRKDCP78527 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 AC131206.1-201ENST00000538078 1211 ntBASIC10.61□□□□□ -0.71
PRKDCP78527 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC10.61□□□□□ -0.71
PRKDCP78527 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC10.61□□□□□ -0.71
PRKDCP78527 ST5-261ENST00000626808 1071 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC10.61□□□□□ -0.71
PRKDCP78527 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC10.61□□□□□ -0.71
PRKDCP78527 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
PRKDCP78527 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC10.61□□□□□ -0.71
PRKDCP78527 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC10.6□□□□□ -0.71
PRKDCP78527 RN7SL530P-201ENST00000485097 298 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 AC026412.1-206ENST00000502273 206 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 CASP3-205ENST00000517513 964 ntTSL 5 BASIC10.6□□□□□ -0.71
PRKDCP78527 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC10.6□□□□□ -0.71
PRKDCP78527 COX5A-205ENST00000568517 582 ntTSL 3 BASIC10.6□□□□□ -0.71
PRKDCP78527 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 AL591424.3-201ENST00000614278 872 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC10.6□□□□□ -0.71
PRKDCP78527 AL357143.1-203ENST00000639750 881 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
PRKDCP78527 AC138761.6-201ENST00000583997 1423 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC10.6□□□□□ -0.71
PRKDCP78527 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
PRKDCP78527 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 ALG1L7P-201ENST00000502317 768 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC10.6□□□□□ -0.71
PRKDCP78527 RPS23-207ENST00000511844 530 ntTSL 2 BASIC10.6□□□□□ -0.71
PRKDCP78527 AC007250.1-201ENST00000608934 338 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC10.6□□□□□ -0.71
PRKDCP78527 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
PRKDCP78527 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms