Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 CU639417.3-201ENST00000624240 1404 ntBASIC14.44□□□□□ -0.1
SOX3P41225 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.44□□□□□ -0.1
SOX3P41225 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 RN7SL752P-201ENST00000463779 287 ntBASIC14.44□□□□□ -0.1
SOX3P41225 KRT18P43-201ENST00000469825 1281 ntBASIC14.44□□□□□ -0.1
SOX3P41225 FAM86LP-201ENST00000478302 853 ntBASIC14.44□□□□□ -0.1
SOX3P41225 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.44□□□□□ -0.1
SOX3P41225 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.44□□□□□ -0.1
SOX3P41225 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 TMEM261P1-201ENST00000604899 340 ntBASIC14.44□□□□□ -0.1
SOX3P41225 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 AC232323.1-201ENST00000540724 2099 ntBASIC14.44□□□□□ -0.1
SOX3P41225 REXO1L5P-201ENST00000622260 2098 ntBASIC14.44□□□□□ -0.1
SOX3P41225 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 AL121723.1-201ENST00000445194 1519 ntBASIC14.44□□□□□ -0.1
SOX3P41225 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
SOX3P41225 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
SOX3P41225 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.44□□□□□ -0.1
SOX3P41225 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 OR2I1P-210ENST00000642037 4691 ntBASIC14.44□□□□□ -0.1
SOX3P41225 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 AGAP7P-201ENST00000582299 2062 ntBASIC14.43□□□□□ -0.1
SOX3P41225 AGAP14-201ENST00000624701 2060 ntBASIC14.43□□□□□ -0.1
SOX3P41225 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 AC007326.2-201ENST00000624224 7579 ntBASIC14.43□□□□□ -0.1
SOX3P41225 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SOX3P41225 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX3P41225 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX3P41225 AC092552.1-201ENST00000547243 906 ntBASIC14.43□□□□□ -0.1
SOX3P41225 CR383656.12-201ENST00000549567 513 ntBASIC14.43□□□□□ -0.1
SOX3P41225 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX3P41225 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 WFDC1-204ENST00000613603 549 ntBASIC14.43□□□□□ -0.1
SOX3P41225 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SOX3P41225 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX3P41225 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms