Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.15■□□□□ 0.18
CHRNA3P32297 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.15■□□□□ 0.18
CHRNA3P32297 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 SPDYE18-201ENST00000510091 1050 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 DOC2GP-202ENST00000514950 1163 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.15■□□□□ 0.18
CHRNA3P32297 AC025048.3-201ENST00000590609 569 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AC005702.4-201ENST00000618393 416 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AF228730.6-201ENST00000641497 218 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AC084121.3-201ENST00000641716 218 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 AC105233.6-201ENST00000642093 218 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16.15■□□□□ 0.18
CHRNA3P32297 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.15■□□□□ 0.18
CHRNA3P32297 AC007541.1-201ENST00000570282 1469 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHRNA3P32297 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CHRNA3P32297 AP000845.1-201ENST00000581677 2131 ntBASIC16.15■□□□□ 0.18
CHRNA3P32297 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CHRNA3P32297 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.15■□□□□ 0.18
CHRNA3P32297 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.14■□□□□ 0.17
CHRNA3P32297 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.14■□□□□ 0.17
CHRNA3P32297 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHRNA3P32297 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.14■□□□□ 0.17
CHRNA3P32297 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CHRNA3P32297 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.14■□□□□ 0.17
CHRNA3P32297 SPDYE19P-201ENST00000338590 713 ntBASIC16.14■□□□□ 0.17
CHRNA3P32297 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.14■□□□□ 0.17
CHRNA3P32297 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.14■□□□□ 0.17
CHRNA3P32297 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 AL132655.2-201ENST00000596276 594 ntBASIC16.14■□□□□ 0.17
CHRNA3P32297 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.14■□□□□ 0.17
CHRNA3P32297 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.14■□□□□ 0.17
CHRNA3P32297 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CHRNA3P32297 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.14■□□□□ 0.17
CHRNA3P32297 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CHRNA3P32297 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHRNA3P32297 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CHRNA3P32297 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.13■□□□□ 0.17
CHRNA3P32297 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.13■□□□□ 0.17
CHRNA3P32297 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.13■□□□□ 0.17
CHRNA3P32297 SPDYE22P-201ENST00000582158 798 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.13■□□□□ 0.17
CHRNA3P32297 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.13■□□□□ 0.17
CHRNA3P32297 AC027307.3-201ENST00000594262 1100 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 SRD5A3P1-201ENST00000603021 949 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 AC074044.1-201ENST00000609673 707 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 AL662799.1-202ENST00000614205 422 ntBASIC16.13■□□□□ 0.17
CHRNA3P32297 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHRNA3P32297 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.13■□□□□ 0.17
CHRNA3P32297 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms