Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPL7P3-201ENST00000441388 714 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 CTBP2P5-201ENST00000454986 1264 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.93□□□□□ -0.18
HOXD4P09016 AP001889.1-201ENST00000525414 633 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 AL583810.1-201ENST00000553344 1045 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.93□□□□□ -0.18
HOXD4P09016 AC015910.1-201ENST00000579400 975 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 RN7SL219P-201ENST00000582872 296 ntBASIC13.93□□□□□ -0.18
HOXD4P09016 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.93□□□□□ -0.18
HOXD4P09016 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
HOXD4P09016 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HOXD4P09016 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXD4P09016 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXD4P09016 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 AC134312.5-201ENST00000568031 1313 ntBASIC13.92□□□□□ -0.18
HOXD4P09016 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 PDIA3P1-201ENST00000471856 1510 ntBASIC13.92□□□□□ -0.18
HOXD4P09016 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD4P09016 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD4P09016 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
HOXD4P09016 RNA5SP412-201ENST00000516234 123 ntBASIC13.92□□□□□ -0.18
HOXD4P09016 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.92□□□□□ -0.18
HOXD4P09016 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 AP000812.2-201ENST00000538934 718 ntBASIC13.92□□□□□ -0.18
HOXD4P09016 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 CLUHP6-201ENST00000580789 941 ntBASIC13.92□□□□□ -0.18
HOXD4P09016 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD4P09016 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD4P09016 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD4P09016 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD4P09016 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD4P09016 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
HOXD4P09016 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD4P09016 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD4P09016 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms