Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
PDGFBP01127 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PDGFBP01127 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.11■□□□□ 0.01
PDGFBP01127 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.11■□□□□ 0.01
PDGFBP01127 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.11■□□□□ 0.01
PDGFBP01127 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.11■□□□□ 0.01
PDGFBP01127 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.11■□□□□ 0.01
PDGFBP01127 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDGFBP01127 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 FLJ38576-201ENST00000623820 2459 ntBASIC15.1■□□□□ 0.01
PDGFBP01127 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PDGFBP01127 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC15.1■□□□□ 0.01
PDGFBP01127 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.1■□□□□ 0.01
PDGFBP01127 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC15.1■□□□□ 0.01
PDGFBP01127 KRT17P4-201ENST00000429445 819 ntBASIC15.1■□□□□ 0.01
PDGFBP01127 AC093909.3-201ENST00000504783 336 ntBASIC15.1■□□□□ 0.01
PDGFBP01127 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.1■□□□□ 0.01
PDGFBP01127 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.1■□□□□ 0.01
PDGFBP01127 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
PDGFBP01127 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDGFBP01127 AC124067.4-201ENST00000519691 2379 ntBASIC15.1■□□□□ 0.01
PDGFBP01127 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.1■□□□□ 0.01
PDGFBP01127 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.09■□□□□ 0.01
PDGFBP01127 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 AC006449.5-201ENST00000610658 2098 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 RN7SKP230-201ENST00000365642 335 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 DUTP3-201ENST00000450025 415 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.09■□□□□ 0.01
PDGFBP01127 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 AC027139.1-201ENST00000565286 951 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.09■□□□□ 0.01
PDGFBP01127 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.09■□□□□ 0.01
PDGFBP01127 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
PDGFBP01127 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.09■□□□□ 0.01
PDGFBP01127 AP001184.1-201ENST00000637936 376 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 KRT18P9-201ENST00000604826 1300 ntBASIC15.09■□□□□ 0.01
PDGFBP01127 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.09■□□□□ 0.01
PDGFBP01127 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PDGFBP01127 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
PDGFBP01127 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PDGFBP01127 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PDGFBP01127 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
PDGFBP01127 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.08■□□□□ 0.01
PDGFBP01127 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.08■□□□□ 0.01
PDGFBP01127 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PDGFBP01127 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PDGFBP01127 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms