Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH5O43196 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH5O43196 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH5O43196 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC21.61■■□□□ 1.05
MSH5O43196 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 MTCO1P8-201ENST00000416914 1523 ntBASIC21.61■■□□□ 1.05
MSH5O43196 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 CEBPZOS-201ENST00000392061 695 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 MAML3-201ENST00000398940 831 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 AL353572.1-201ENST00000442490 417 ntBASIC21.61■■□□□ 1.05
MSH5O43196 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AC010625.1-201ENST00000511296 403 ntBASIC21.61■■□□□ 1.05
MSH5O43196 SNORA26.10-201ENST00000516427 141 ntBASIC21.61■■□□□ 1.05
MSH5O43196 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AC093334.1-201ENST00000559904 423 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AC010809.2-201ENST00000560404 964 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 RN7SL339P-201ENST00000580597 296 ntBASIC21.61■■□□□ 1.05
MSH5O43196 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH5O43196 AL162274.1-201ENST00000617191 1098 ntBASIC21.61■■□□□ 1.05
MSH5O43196 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
MSH5O43196 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
MSH5O43196 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH5O43196 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 AC073347.1-201ENST00000421633 2643 ntBASIC21.6■■□□□ 1.05
MSH5O43196 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
MSH5O43196 RNU6-584P-201ENST00000410350 95 ntBASIC21.6■■□□□ 1.05
MSH5O43196 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH5O43196 KIF3AP1-201ENST00000454055 611 ntBASIC21.6■■□□□ 1.05
MSH5O43196 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.6■■□□□ 1.05
MSH5O43196 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC21.6■■□□□ 1.05
MSH5O43196 AP000842.3-202ENST00000569238 1080 ntBASIC21.6■■□□□ 1.05
MSH5O43196 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 AC108125.1-201ENST00000622310 543 ntBASIC21.6■■□□□ 1.05
MSH5O43196 AL356266.1-201ENST00000623311 483 ntBASIC21.6■■□□□ 1.05
MSH5O43196 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms