Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 STK40-201ENST00000359297 4837 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 IGLL3P-201ENST00000412472 434 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PRSS29P-201ENST00000440800 595 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC108751.1-201ENST00000490852 363 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 RNPS1P1-201ENST00000507437 918 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 KRT18P21-201ENST00000515767 1272 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AL138918.1-201ENST00000568306 659 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MIR3652-201ENST00000579335 131 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC011467.4-201ENST00000594891 528 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC117500.6-201ENST00000624871 588 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 AL359183.1-201ENST00000623796 2132 ntBASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms