Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHB1Q9Y5F3 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHB1Q9Y5F3 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHB1Q9Y5F3 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ZBED1P1-201ENST00000502364 1930 ntBASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AC091951.1-201ENST00000512854 2465 ntBASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 TDH-203ENST00000531764 1110 ntBASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDHB1Q9Y5F3 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AC012508.2-201ENST00000567613 1472 ntBASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AL162726.2-201ENST00000438986 1017 ntBASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHB1Q9Y5F3 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDHB1Q9Y5F3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDHB1Q9Y5F3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDHB1Q9Y5F3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDHB1Q9Y5F3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDHB1Q9Y5F3 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms