Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 KRT18P28-201ENST00000453838 1332 ntBASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 FAM8A3P-201ENST00000427218 844 ntBASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 FAM86GP-201ENST00000448322 971 ntBASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 RN7SL618P-201ENST00000477850 296 ntBASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AC067863.1-201ENST00000494933 530 ntBASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RHBDD3Q9Y3P4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.46□□□□□ -0.26
RHBDD3Q9Y3P4 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 RPL5P21-201ENST00000404620 815 ntBASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 KRT18P64-201ENST00000434946 1219 ntBASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 METTL21AP1-201ENST00000438852 635 ntBASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RHBDD3Q9Y3P4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms