Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 OR8S1-201ENST00000310194 1080 ntBASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 TOMM22P5-201ENST00000416399 439 ntBASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 AC112492.5-201ENST00000421897 457 ntBASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 AC010319.3-201ENST00000597028 470 ntBASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 RPSAP52-203ENST00000622976 1023 ntBASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 LINC01101-201ENST00000622953 1884 ntBASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 AC244107.1-201ENST00000442033 332 ntBASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 CU634019.7-201ENST00000624153 1185 ntBASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 FP236241.2-201ENST00000624906 1185 ntBASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
CHMP4CQ96CF2 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.27■□□□□ 0.51
CHMP4CQ96CF2 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP4CQ96CF2 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP4CQ96CF2 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC18.27■□□□□ 0.51
CHMP4CQ96CF2 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHMP4CQ96CF2 MSTO2P-201ENST00000314835 1709 ntBASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 GHSR-202ENST00000427970 912 ntBASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AC133539.2-201ENST00000604757 467 ntBASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 AC023024.2-201ENST00000623561 1993 ntBASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP4CQ96CF2 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP4CQ96CF2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP4CQ96CF2 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP4CQ96CF2 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms