Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TNRC18P3-201ENST00000441896 2691 ntBASIC15.03■□□□□ -0
CXCL12P48061 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 AC011840.2-201ENST00000563063 1520 ntBASIC15.03■□□□□ -0
CXCL12P48061 KRT8P21-201ENST00000430398 1491 ntBASIC15.03■□□□□ -0
CXCL12P48061 AC080080.1-201ENST00000625121 2420 ntBASIC15.03■□□□□ -0
CXCL12P48061 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.03■□□□□ -0
CXCL12P48061 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.03■□□□□ -0
CXCL12P48061 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 AP000356.3-201ENST00000382243 753 ntBASIC15.03■□□□□ -0
CXCL12P48061 RN7SL67P-201ENST00000492147 296 ntBASIC15.03■□□□□ -0
CXCL12P48061 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CXCL12P48061 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.03■□□□□ -0
CXCL12P48061 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.03■□□□□ -0
CXCL12P48061 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.03■□□□□ -0
CXCL12P48061 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.03■□□□□ -0
CXCL12P48061 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC15.03■□□□□ -0
CXCL12P48061 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.03■□□□□ -0
CXCL12P48061 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CXCL12P48061 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CXCL12P48061 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CXCL12P48061 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CXCL12P48061 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CXCL12P48061 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.02■□□□□ -0
CXCL12P48061 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CXCL12P48061 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
CXCL12P48061 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CXCL12P48061 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.02■□□□□ -0
CXCL12P48061 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.02■□□□□ -0
CXCL12P48061 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC15.02■□□□□ -0
CXCL12P48061 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.02■□□□□ -0
CXCL12P48061 PFN2-202ENST00000423691 911 ntTSL 2 BASIC15.02■□□□□ -0
CXCL12P48061 AC026320.2-201ENST00000434379 478 ntBASIC15.02■□□□□ -0
CXCL12P48061 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.02■□□□□ -0
CXCL12P48061 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.02■□□□□ -0
CXCL12P48061 DNM1P30-201ENST00000563586 452 ntBASIC15.02■□□□□ -0
CXCL12P48061 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.02■□□□□ -0
CXCL12P48061 AC007718.1-201ENST00000621078 280 ntBASIC15.02■□□□□ -0
CXCL12P48061 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL12P48061 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
CXCL12P48061 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CXCL12P48061 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
CXCL12P48061 AC006058.4-201ENST00000624016 1670 ntBASIC15.02□□□□□ -0.01
CXCL12P48061 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
CXCL12P48061 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
CXCL12P48061 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
CXCL12P48061 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
CXCL12P48061 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
CXCL12P48061 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CXCL12P48061 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.02□□□□□ -0.01
CXCL12P48061 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL12P48061 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CXCL12P48061 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.01□□□□□ -0.01
CXCL12P48061 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
CXCL12P48061 CYP51A1P3-201ENST00000400072 1428 ntBASIC15.01□□□□□ -0.01
CXCL12P48061 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL12P48061 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CXCL12P48061 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL12P48061 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL12P48061 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms