Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
VCANP13611 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VCANP13611 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC15.4■□□□□ 0.06
VCANP13611 AC012508.2-201ENST00000567613 1472 ntBASIC15.4■□□□□ 0.06
VCANP13611 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
VCANP13611 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 FRMPD2B-201ENST00000431305 1347 ntBASIC15.4■□□□□ 0.06
VCANP13611 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC15.4■□□□□ 0.06
VCANP13611 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 RN7SKP175-201ENST00000408472 289 ntBASIC15.4■□□□□ 0.06
VCANP13611 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC15.4■□□□□ 0.06
VCANP13611 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 LY6E-215ENST00000523847 427 ntTSL 3 BASIC15.4■□□□□ 0.06
VCANP13611 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 FBXO36P1-201ENST00000579006 471 ntBASIC15.4■□□□□ 0.06
VCANP13611 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
VCANP13611 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 GEMIN8P4-201ENST00000380526 729 ntBASIC15.4■□□□□ 0.06
VCANP13611 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.4■□□□□ 0.06
VCANP13611 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.4■□□□□ 0.06
VCANP13611 RN7SL121P-201ENST00000584223 273 ntBASIC15.4■□□□□ 0.06
VCANP13611 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VCANP13611 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VCANP13611 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.06
VCANP13611 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.39■□□□□ 0.05
VCANP13611 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 AC021305.1-201ENST00000520656 1514 ntBASIC15.39■□□□□ 0.05
VCANP13611 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.39■□□□□ 0.05
VCANP13611 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 AC007292.2-201ENST00000593524 1812 ntBASIC15.39■□□□□ 0.05
VCANP13611 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
VCANP13611 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 KRT8P30-201ENST00000432100 650 ntBASIC15.39■□□□□ 0.05
VCANP13611 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
VCANP13611 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 FKBP4P6-201ENST00000457486 1332 ntBASIC15.39■□□□□ 0.05
VCANP13611 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 KRT8P6-201ENST00000399259 1207 ntBASIC15.39■□□□□ 0.05
VCANP13611 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.39■□□□□ 0.05
VCANP13611 AC092580.1-201ENST00000433998 658 ntBASIC15.39■□□□□ 0.05
VCANP13611 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.39■□□□□ 0.05
VCANP13611 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC15.39■□□□□ 0.05
VCANP13611 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC15.39■□□□□ 0.05
VCANP13611 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.39■□□□□ 0.05
VCANP13611 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
VCANP13611 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VCANP13611 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.38■□□□□ 0.05
VCANP13611 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.38■□□□□ 0.05
VCANP13611 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms