Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL6A1P12109 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL6A1P12109 INE2-201ENST00000630399 1874 ntBASIC16.67■□□□□ 0.26
COL6A1P12109 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 AL008718.2-201ENST00000609206 1313 ntBASIC16.67■□□□□ 0.26
COL6A1P12109 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A1P12109 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL6A1P12109 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A1P12109 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 AC244394.1-201ENST00000435000 1665 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 AC112504.1-201ENST00000623415 1841 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A1P12109 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL6A1P12109 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A1P12109 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 RPL8P2-201ENST00000430538 502 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 AC078875.1-201ENST00000431907 724 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL6A1P12109 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A1P12109 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A1P12109 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL6A1P12109 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A1P12109 AL109837.1-201ENST00000603272 613 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 AC005632.3-201ENST00000605544 308 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A1P12109 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 KRT8P21-201ENST00000430398 1491 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 PCDHA14-201ENST00000506751 2298 ntBASIC16.66■□□□□ 0.26
COL6A1P12109 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A1P12109 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
COL6A1P12109 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A1P12109 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A1P12109 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A1P12109 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A1P12109 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A1P12109 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A1P12109 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A1P12109 AC026320.2-201ENST00000434379 478 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 AC012362.1-201ENST00000434906 739 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A1P12109 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A1P12109 AC010234.1-201ENST00000494599 870 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A1P12109 RBM8B-201ENST00000555532 525 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A1P12109 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A1P12109 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 MIR6858-201ENST00000620733 67 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 Z98259.2-201ENST00000641583 609 ntBASIC16.65■□□□□ 0.26
COL6A1P12109 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL6A1P12109 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A1P12109 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms