Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.45■□□□□ 0.06
VIMP08670 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
VIMP08670 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.45■□□□□ 0.06
VIMP08670 KRT8P37-201ENST00000451609 1420 ntBASIC15.45■□□□□ 0.06
VIMP08670 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
VIMP08670 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.45■□□□□ 0.06
VIMP08670 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.45■□□□□ 0.06
VIMP08670 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.45■□□□□ 0.06
VIMP08670 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.45■□□□□ 0.06
VIMP08670 RPS2P1-201ENST00000434010 821 ntBASIC15.45■□□□□ 0.06
VIMP08670 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.45■□□□□ 0.06
VIMP08670 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.45■□□□□ 0.06
VIMP08670 PRELID1P1-202ENST00000567272 903 ntBASIC15.45■□□□□ 0.06
VIMP08670 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.45■□□□□ 0.06
VIMP08670 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.45■□□□□ 0.06
VIMP08670 AL356488.2-201ENST00000602755 427 ntBASIC15.45■□□□□ 0.06
VIMP08670 AC005593.1-201ENST00000624894 515 ntBASIC15.45■□□□□ 0.06
VIMP08670 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VIMP08670 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.44■□□□□ 0.06
VIMP08670 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
VIMP08670 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
VIMP08670 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 AL136982.4-201ENST00000437689 1740 ntBASIC15.44■□□□□ 0.06
VIMP08670 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.44■□□□□ 0.06
VIMP08670 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.44■□□□□ 0.06
VIMP08670 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
VIMP08670 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
VIMP08670 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.44■□□□□ 0.06
VIMP08670 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.44■□□□□ 0.06
VIMP08670 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 AL731571.1-201ENST00000617058 5428 ntBASIC15.44■□□□□ 0.06
VIMP08670 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC15.44■□□□□ 0.06
VIMP08670 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC15.44■□□□□ 0.06
VIMP08670 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VIMP08670 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
VIMP08670 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms