Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 NUS1P3-201ENST00000423502 862 ntBASIC13.66□□□□□ -0.22
CNOT4O95628 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.66□□□□□ -0.22
CNOT4O95628 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.66□□□□□ -0.22
CNOT4O95628 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
CNOT4O95628 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 AP001063.1-201ENST00000568332 529 ntBASIC13.66□□□□□ -0.22
CNOT4O95628 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.66□□□□□ -0.22
CNOT4O95628 AC025181.2-201ENST00000606994 802 ntBASIC13.66□□□□□ -0.22
CNOT4O95628 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.66□□□□□ -0.22
CNOT4O95628 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CNOT4O95628 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CNOT4O95628 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CNOT4O95628 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CNOT4O95628 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 AC092384.3-202ENST00000564646 2873 ntBASIC13.65□□□□□ -0.22
CNOT4O95628 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 AL645937.2-201ENST00000396808 931 ntBASIC13.65□□□□□ -0.22
CNOT4O95628 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.65□□□□□ -0.22
CNOT4O95628 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 AC245100.3-201ENST00000441281 285 ntBASIC13.65□□□□□ -0.22
CNOT4O95628 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.65□□□□□ -0.22
CNOT4O95628 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.65□□□□□ -0.22
CNOT4O95628 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 AC107373.2-201ENST00000607735 490 ntBASIC13.65□□□□□ -0.22
CNOT4O95628 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CNOT4O95628 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CNOT4O95628 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CNOT4O95628 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.23
CNOT4O95628 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.65□□□□□ -0.23
CNOT4O95628 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 AP003680.1-201ENST00000598970 3660 ntBASIC13.64□□□□□ -0.23
CNOT4O95628 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms