Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SIX3O95343 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SIX3O95343 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 AC114501.2-201ENST00000439631 535 ntBASIC14.98□□□□□ -0.01
SIX3O95343 AC092183.1-201ENST00000469884 875 ntBASIC14.98□□□□□ -0.01
SIX3O95343 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 IGHV3-42-201ENST00000520410 361 ntBASIC14.98□□□□□ -0.01
SIX3O95343 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.98□□□□□ -0.01
SIX3O95343 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
SIX3O95343 AC092337.1-201ENST00000568699 1129 ntBASIC14.98□□□□□ -0.01
SIX3O95343 AC009407.1-201ENST00000568958 598 ntBASIC14.98□□□□□ -0.01
SIX3O95343 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.98□□□□□ -0.01
SIX3O95343 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 AL157414.3-201ENST00000624276 1954 ntBASIC14.98□□□□□ -0.01
SIX3O95343 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.98□□□□□ -0.01
SIX3O95343 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SIX3O95343 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.98□□□□□ -0.01
SIX3O95343 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.97□□□□□ -0.01
SIX3O95343 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.97□□□□□ -0.01
SIX3O95343 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
SIX3O95343 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SIX3O95343 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.97□□□□□ -0.01
SIX3O95343 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.97□□□□□ -0.01
SIX3O95343 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.97□□□□□ -0.01
SIX3O95343 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.97□□□□□ -0.01
SIX3O95343 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.97□□□□□ -0.01
SIX3O95343 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.97□□□□□ -0.01
SIX3O95343 AC009477.1-201ENST00000452936 217 ntBASIC14.97□□□□□ -0.01
SIX3O95343 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.97□□□□□ -0.01
SIX3O95343 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
SIX3O95343 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 SAMD11P1-201ENST00000571429 661 ntBASIC14.97□□□□□ -0.01
SIX3O95343 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SIX3O95343 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.97□□□□□ -0.01
SIX3O95343 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
SIX3O95343 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.97□□□□□ -0.01
SIX3O95343 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.97□□□□□ -0.01
SIX3O95343 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SIX3O95343 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms