Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 MIR661-201ENST00000384842 89 ntBASIC16.37■□□□□ 0.21
FOXN3O00409 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AC098850.1-201ENST00000419919 790 ntBASIC16.37■□□□□ 0.21
FOXN3O00409 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.37■□□□□ 0.21
FOXN3O00409 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AC099568.2-201ENST00000609194 695 ntBASIC16.37■□□□□ 0.21
FOXN3O00409 AC009118.2-201ENST00000613275 655 ntBASIC16.37■□□□□ 0.21
FOXN3O00409 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AC018442.1-201ENST00000421439 2061 ntBASIC16.37■□□□□ 0.21
FOXN3O00409 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 AC140479.7-201ENST00000636301 2332 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 AL009178.2-201ENST00000597278 2719 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 AC055876.2-201ENST00000531834 546 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXN3O00409 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 CHCHD2P3-201ENST00000603038 451 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 AC093813.1-201ENST00000605066 256 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 AJ011932.1-201ENST00000621707 465 ntBASIC16.36■□□□□ 0.21
FOXN3O00409 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
FOXN3O00409 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXN3O00409 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXN3O00409 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 AL136379.1-201ENST00000623471 2642 ntBASIC16.35■□□□□ 0.21
FOXN3O00409 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
FOXN3O00409 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
FOXN3O00409 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 AC063926.3-201ENST00000624734 5658 ntBASIC16.35■□□□□ 0.21
FOXN3O00409 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
FOXN3O00409 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms