Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SPDYE17-201ENST00000412399 783 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 AC074338.1-201ENST00000416825 156 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 AL671277.1-201ENST00000429656 993 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 KRT18P2-201ENST00000447938 1258 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SLED1-202ENST00000512051 380 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 LINC01225-203ENST00000563550 1244 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 AC064836.3-201ENST00000607928 673 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 AL356585.2-201ENST00000625078 2396 ntBASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TCRBV3S1A0A5B6 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 Z83851.2-201ENST00000609564 659 ntBASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AC012313.10-201ENST00000623509 926 ntBASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 AC097376.2-205ENST00000610159 5334 ntBASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TCRBV3S1A0A5B6 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms