Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MKS1Q9NXB0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 AC023090.2-201ENST00000625182 2110 ntBASIC15.1■□□□□ 0.01
MKS1Q9NXB0 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 AC004066.1-201ENST00000502488 802 ntBASIC15.1■□□□□ 0.01
MKS1Q9NXB0 YBX1P5-201ENST00000509441 847 ntBASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 MIR4453-201ENST00000584019 89 ntBASIC15.1■□□□□ 0.01
MKS1Q9NXB0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 AGGF1P1-201ENST00000509500 2073 ntBASIC15.1■□□□□ 0.01
MKS1Q9NXB0 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
MKS1Q9NXB0 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CEND1P1-201ENST00000451006 455 ntBASIC15.09■□□□□ 0.01
MKS1Q9NXB0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 GAPDHP40-201ENST00000505218 1006 ntBASIC15.09■□□□□ 0.01
MKS1Q9NXB0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MKS1Q9NXB0 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MKS1Q9NXB0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
MKS1Q9NXB0 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms