Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 RPL13P2-201ENST00000440687 659 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 AC067863.1-201ENST00000494933 530 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 AL589739.1-201ENST00000607720 493 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 Z92544.3-201ENST00000624747 417 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
PTP4A1Q93096 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PTP4A1Q93096 PCDHA3-202ENST00000532566 4594 ntBASIC13.8□□□□□ -0.2
PTP4A1Q93096 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 TOMM22P5-201ENST00000416399 439 ntBASIC13.79□□□□□ -0.2
PTP4A1Q93096 AL080243.2-201ENST00000418783 582 ntBASIC13.79□□□□□ -0.2
PTP4A1Q93096 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 AC015911.4-201ENST00000588022 1070 ntBASIC13.79□□□□□ -0.2
PTP4A1Q93096 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.79□□□□□ -0.2
PTP4A1Q93096 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PTP4A1Q93096 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms