Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AC074338.1-201ENST00000416825 156 ntBASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AC109322.1-201ENST00000524499 1264 ntBASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 SNHG9-202ENST00000564014 471 ntBASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 LINC00628-201ENST00000628516 1289 ntBASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP4Q8N3C7 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 RPL37AP1-201ENST00000412502 279 ntBASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 AL080243.2-201ENST00000418783 582 ntBASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 AC004967.1-201ENST00000453589 447 ntBASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 AC069262.1-201ENST00000539058 672 ntBASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP4Q8N3C7 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms