Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 KLF2P1-201ENST00000447438 1042 ntBASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 AC010234.1-201ENST00000494599 870 ntBASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 ALG1L13P-202ENST00000519320 584 ntBASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC88AQ3V6T2 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 AL157414.3-201ENST00000624276 1954 ntBASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 RN7SL81P-201ENST00000493781 261 ntBASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 AC008723.1-201ENST00000506922 207 ntBASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC88AQ3V6T2 FAM90A2P-201ENST00000511144 1395 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 FAM90A25P-201ENST00000528404 1395 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 MST1L-201ENST00000442552 2185 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 MRPL22P1-201ENST00000505398 616 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AC022616.1-201ENST00000518688 554 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AL031713.1-201ENST00000564813 661 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 KRT18P9-201ENST00000604826 1300 ntBASIC18.3■□□□□ 0.52
CCDC88AQ3V6T2 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC88AQ3V6T2 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms