Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.16□□□□□ -0.3
ABCA4P78363 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.16□□□□□ -0.3
ABCA4P78363 AC091812.3-201ENST00000621362 345 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 AL353726.2-201ENST00000623259 884 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 BX539320.1-201ENST00000623759 877 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 AC244452.3-201ENST00000636814 210 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 AC069224.1-201ENST00000566372 1715 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 LINC02447-202ENST00000501888 2146 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 TSPY26P-202ENST00000565928 3884 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.16□□□□□ -0.3
ABCA4P78363 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC13.16□□□□□ -0.3
ABCA4P78363 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 RN7SL713P-201ENST00000582127 302 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.16□□□□□ -0.3
ABCA4P78363 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.16□□□□□ -0.3
ABCA4P78363 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.16□□□□□ -0.3
ABCA4P78363 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
ABCA4P78363 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 KRT8P14-201ENST00000414254 1442 ntBASIC13.16□□□□□ -0.3
ABCA4P78363 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
ABCA4P78363 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
ABCA4P78363 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
ABCA4P78363 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
ABCA4P78363 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA4P78363 MIR769-201ENST00000390225 118 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 ACTBP8-201ENST00000403258 1108 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 AL645939.5-201ENST00000606834 243 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 AL596087.1-201ENST00000400979 1969 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA4P78363 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA4P78363 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA4P78363 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA4P78363 AL355334.1-201ENST00000417713 215 ntBASIC13.15□□□□□ -0.3
ABCA4P78363 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms