Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
UBA52P62987 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
UBA52P62987 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.33□□□□□ -0.28
UBA52P62987 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.33□□□□□ -0.28
UBA52P62987 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.33□□□□□ -0.28
UBA52P62987 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 AC018529.1-201ENST00000613063 361 ntBASIC13.33□□□□□ -0.28
UBA52P62987 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.33□□□□□ -0.28
UBA52P62987 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
UBA52P62987 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
UBA52P62987 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.33□□□□□ -0.28
UBA52P62987 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
UBA52P62987 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 CICP20-201ENST00000443330 2801 ntBASIC13.32□□□□□ -0.28
UBA52P62987 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 MRPS18AP1-201ENST00000414458 589 ntBASIC13.32□□□□□ -0.28
UBA52P62987 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.32□□□□□ -0.28
UBA52P62987 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 CR383656.12-201ENST00000549567 513 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.32□□□□□ -0.28
UBA52P62987 RARRES2P9-201ENST00000565168 469 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AL138918.1-201ENST00000568306 659 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.32□□□□□ -0.28
UBA52P62987 SPDYE22P-201ENST00000582158 798 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AC004233.3-201ENST00000607794 1269 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AC003101.2-201ENST00000612557 442 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AL662799.1-202ENST00000614205 422 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AL590560.3-201ENST00000623350 461 ntBASIC13.32□□□□□ -0.28
UBA52P62987 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 AC025048.6-201ENST00000634326 1161 ntBASIC13.32□□□□□ -0.28
UBA52P62987 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.32□□□□□ -0.28
UBA52P62987 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.32□□□□□ -0.28
UBA52P62987 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
UBA52P62987 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms