Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.62■□□□□ 0.41
CTCFP49711 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 MIR4472-1-201ENST00000584349 80 ntBASIC17.62■□□□□ 0.41
CTCFP49711 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC17.62■□□□□ 0.41
CTCFP49711 AL162426.1-201ENST00000624141 743 ntBASIC17.62■□□□□ 0.41
CTCFP49711 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.61■□□□□ 0.41
CTCFP49711 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CTCFP49711 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.61■□□□□ 0.41
CTCFP49711 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 AC239868.1-201ENST00000369385 493 ntBASIC17.61■□□□□ 0.41
CTCFP49711 CHCHD2P9-201ENST00000461726 456 ntBASIC17.61■□□□□ 0.41
CTCFP49711 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.61■□□□□ 0.41
CTCFP49711 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.61■□□□□ 0.41
CTCFP49711 AL450472.2-201ENST00000603663 1156 ntBASIC17.61■□□□□ 0.41
CTCFP49711 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.61■□□□□ 0.41
CTCFP49711 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CTCFP49711 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 AC079328.2-201ENST00000561241 3354 ntBASIC17.61■□□□□ 0.41
CTCFP49711 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.61■□□□□ 0.41
CTCFP49711 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CTCFP49711 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 PCDHB17P-201ENST00000539533 2393 ntBASIC17.6■□□□□ 0.41
CTCFP49711 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.6■□□□□ 0.41
CTCFP49711 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 COX20P1-201ENST00000366529 357 ntBASIC17.6■□□□□ 0.41
CTCFP49711 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CTCFP49711 KRT17P4-201ENST00000429445 819 ntBASIC17.6■□□□□ 0.41
CTCFP49711 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.6■□□□□ 0.41
CTCFP49711 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CTCFP49711 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.6■□□□□ 0.41
CTCFP49711 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.6■□□□□ 0.41
CTCFP49711 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.6■□□□□ 0.41
CTCFP49711 AC100827.2-201ENST00000563214 1194 ntBASIC17.6■□□□□ 0.41
CTCFP49711 AC021016.3-201ENST00000608367 477 ntBASIC17.6■□□□□ 0.41
CTCFP49711 AC138466.5-201ENST00000624002 808 ntBASIC17.6■□□□□ 0.41
CTCFP49711 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CTCFP49711 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
CTCFP49711 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.6■□□□□ 0.41
CTCFP49711 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 DOC2GP-204ENST00000639052 2548 ntBASIC17.6■□□□□ 0.41
CTCFP49711 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CTCFP49711 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CTCFP49711 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 259.9 ms