Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.06□□□□□ -0.16
MSX1P28360 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.06□□□□□ -0.16
MSX1P28360 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 AC010319.3-201ENST00000597028 470 ntBASIC14.06□□□□□ -0.16
MSX1P28360 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 AC107373.2-201ENST00000607735 490 ntBASIC14.06□□□□□ -0.16
MSX1P28360 PPT1-215ENST00000641471 2368 ntBASIC14.06□□□□□ -0.16
MSX1P28360 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
MSX1P28360 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
MSX1P28360 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 AL138799.1-201ENST00000448213 1675 ntBASIC14.05□□□□□ -0.16
MSX1P28360 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.05□□□□□ -0.16
MSX1P28360 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 AC104989.1-201ENST00000519711 778 ntBASIC14.05□□□□□ -0.16
MSX1P28360 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 SAMD11P1-201ENST00000571429 661 ntBASIC14.05□□□□□ -0.16
MSX1P28360 MIR4525-201ENST00000580000 75 ntBASIC14.05□□□□□ -0.16
MSX1P28360 RN7SL121P-201ENST00000584223 273 ntBASIC14.05□□□□□ -0.16
MSX1P28360 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
MSX1P28360 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 WASH3P-207ENST00000560956 1394 ntBASIC14.05□□□□□ -0.16
MSX1P28360 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.05□□□□□ -0.16
MSX1P28360 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX1P28360 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX1P28360 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX1P28360 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.04□□□□□ -0.16
MSX1P28360 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms