Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
RIPK2O43353 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
RIPK2O43353 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
RIPK2O43353 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
RIPK2O43353 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.58■□□□□ 0.08
RIPK2O43353 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.58■□□□□ 0.08
RIPK2O43353 AL133215.2-201ENST00000609242 977 ntBASIC15.58■□□□□ 0.08
RIPK2O43353 MIR600HG-201ENST00000449175 5984 ntBASIC15.58■□□□□ 0.08
RIPK2O43353 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 KRT8P12-202ENST00000472924 1397 ntBASIC15.58■□□□□ 0.08
RIPK2O43353 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
RIPK2O43353 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
RIPK2O43353 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RIPK2O43353 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 AL450487.1-201ENST00000426799 995 ntBASIC15.57■□□□□ 0.08
RIPK2O43353 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.57■□□□□ 0.08
RIPK2O43353 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.57■□□□□ 0.08
RIPK2O43353 AL592309.1-201ENST00000443127 649 ntBASIC15.57■□□□□ 0.08
RIPK2O43353 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.57■□□□□ 0.08
RIPK2O43353 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.57■□□□□ 0.08
RIPK2O43353 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.57■□□□□ 0.08
RIPK2O43353 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 AC055717.3-201ENST00000622967 595 ntBASIC15.57■□□□□ 0.08
RIPK2O43353 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 AC089987.1-201ENST00000551654 2209 ntBASIC15.57■□□□□ 0.08
RIPK2O43353 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.57■□□□□ 0.08
RIPK2O43353 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.57■□□□□ 0.08
RIPK2O43353 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RIPK2O43353 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.56■□□□□ 0.08
RIPK2O43353 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
RIPK2O43353 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RIPK2O43353 AC097376.2-205ENST00000610159 5334 ntBASIC15.56■□□□□ 0.08
RIPK2O43353 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
RIPK2O43353 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RIPK2O43353 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RIPK2O43353 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RIPK2O43353 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RIPK2O43353 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RIPK2O43353 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RIPK2O43353 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms