Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.11□□□□□ -0.31
SDCBPO00560 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SDCBPO00560 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.11□□□□□ -0.31
SDCBPO00560 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 AC026150.2-201ENST00000564693 1156 ntBASIC13.11□□□□□ -0.31
SDCBPO00560 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.11□□□□□ -0.31
SDCBPO00560 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.11□□□□□ -0.31
SDCBPO00560 MIR6080-201ENST00000617359 66 ntBASIC13.11□□□□□ -0.31
SDCBPO00560 AC009093.7-201ENST00000623853 1223 ntBASIC13.11□□□□□ -0.31
SDCBPO00560 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.11□□□□□ -0.31
SDCBPO00560 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SDCBPO00560 AL607033.1-201ENST00000623900 1599 ntBASIC13.11□□□□□ -0.31
SDCBPO00560 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SDCBPO00560 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SDCBPO00560 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SDCBPO00560 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 AC126335.2-201ENST00000623362 4637 ntBASIC13.1□□□□□ -0.31
SDCBPO00560 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.1□□□□□ -0.31
SDCBPO00560 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.1□□□□□ -0.31
SDCBPO00560 FAM8A3P-201ENST00000427218 844 ntBASIC13.1□□□□□ -0.31
SDCBPO00560 MTND6P24-201ENST00000440466 518 ntBASIC13.1□□□□□ -0.31
SDCBPO00560 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.1□□□□□ -0.31
SDCBPO00560 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.1□□□□□ -0.31
SDCBPO00560 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 SNHG9-202ENST00000564014 471 ntBASIC13.1□□□□□ -0.31
SDCBPO00560 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SDCBPO00560 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
SDCBPO00560 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SDCBPO00560 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SDCBPO00560 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SDCBPO00560 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms