Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXN3O00409 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXN3O00409 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXN3O00409 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXN3O00409 FAM45BP-202ENST00000592932 1624 ntBASIC16.4■□□□□ 0.22
FOXN3O00409 AL158070.2-201ENST00000623713 1621 ntBASIC16.4■□□□□ 0.22
FOXN3O00409 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXN3O00409 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXN3O00409 AC007292.2-201ENST00000593524 1812 ntBASIC16.4■□□□□ 0.22
FOXN3O00409 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXN3O00409 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
FOXN3O00409 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXN3O00409 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXN3O00409 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXN3O00409 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
FOXN3O00409 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
FOXN3O00409 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
FOXN3O00409 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
FOXN3O00409 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
FOXN3O00409 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
FOXN3O00409 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
FOXN3O00409 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.39■□□□□ 0.21
FOXN3O00409 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXN3O00409 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
FOXN3O00409 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXN3O00409 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXN3O00409 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
FOXN3O00409 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
FOXN3O00409 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 HLA-K-203ENST00000430151 1046 ntBASIC16.38■□□□□ 0.21
FOXN3O00409 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 TSPY16P-201ENST00000449843 468 ntBASIC16.38■□□□□ 0.21
FOXN3O00409 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.38■□□□□ 0.21
FOXN3O00409 AC093004.1-201ENST00000508850 424 ntBASIC16.38■□□□□ 0.21
FOXN3O00409 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXN3O00409 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXN3O00409 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 MTHFR-210ENST00000641407 2387 ntBASIC16.38■□□□□ 0.21
FOXN3O00409 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
FOXN3O00409 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
FOXN3O00409 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
FOXN3O00409 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXN3O00409 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXN3O00409 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
FOXN3O00409 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXN3O00409 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms